IL_9BKD_043
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAAAA(5MU)U*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_043 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.229
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9BKD|1|A|G|807
9BKD|1|A|A|808
9BKD|1|A|A|809
9BKD|1|A|A|810
9BKD|1|A|A|811
9BKD|1|A|A|812
9BKD|1|A|A|813
9BKD|1|A|5MU|814
9BKD|1|A|U|815
*
9BKD|1|A|A|849
9BKD|1|A|C|850
9BKD|1|A|C|851
9BKD|1|A|G|852
9BKD|1|A|C|853
9BKD|1|A|A|854
9BKD|1|A|G|855
9BKD|1|A|C|856
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain C
- Small ribosomal subunit protein eS4, X isoform
- Chain D
- Small ribosomal subunit protein uS4
- Chain J
- 40S ribosomal protein S15a
Coloring options: