IL_9BKD_056
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_056 not in the Motif Atlas
- Geometric match to IL_4WF9_083
- Geometric discrepancy: 0.1714
- The information below is about IL_4WF9_083
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
9BKD|1|A|U|1101
9BKD|1|A|G|1102
9BKD|1|A|C|1103
*
9BKD|1|A|G|1129
9BKD|1|A|G|1130
9BKD|1|A|G|1131
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain M
- 40S ribosomal protein S17
- Chain O
- 40S ribosomal protein S3a
- Chain Q
- 40S ribosomal protein S26
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