IL_9BKD_058
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_058 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0618
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|G|1168
9BKD|1|A|G|1169
9BKD|1|A|A|1170
9BKD|1|A|G|1171
9BKD|1|A|U|1172
9BKD|1|A|A|1173
9BKD|1|A|U|1174
9BKD|1|A|G|1175
*
9BKD|1|A|U|1186
9BKD|1|A|G|1187
9BKD|1|A|A|1188
9BKD|1|A|A|1189
9BKD|1|A|A|1190
9BKD|1|A|C|1191
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 9
- 60S ribosomal protein L41
- Chain E
- Small ribosomal subunit protein uS12
Coloring options: