IL_9BKD_069

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_069 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1681

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9BKD|1|A|G|1327
9BKD|1|A|OMG|1328
9BKD|1|A|U|1329
*
9BKD|1|A|G|1500
9BKD|1|A|C|1501
9BKD|1|A|C|1502

Current chains

Chain A

18S rRNA

Nearby chains

Chain U

Programmed cell death protein 4

Chain Z

Small ribosomal subunit protein uS3