IL_9BKD_072
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 9BKD|1|A|A|1489
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_072 not in the Motif Atlas
- Geometric match to IL_4P3T_005
- Geometric discrepancy: 0.1231
- The information below is about IL_4P3T_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
9BKD|1|A|C|1336
9BKD|1|A|4AC|1337
9BKD|1|A|G|1338
*
9BKD|1|A|C|1488
9BKD|1|A|A|1489
9BKD|1|A|OMG|1490
9BKD|1|A|G|1491
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S2
- Chain U
- Programmed cell death protein 4
- Chain Y
- 40S ribosomal protein S16
- Chain Z
- Small ribosomal subunit protein uS3
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
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