IL_9BKD_075
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 9BKD|1|A|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_075 not in the Motif Atlas
- Homologous match to IL_8C3A_461
- Geometric discrepancy: 0.5569
- The information below is about IL_8C3A_461
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.1
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
9BKD|1|A|C|1395
9BKD|1|A|A|1396
9BKD|1|A|U|1397
9BKD|1|A|G|1398
9BKD|1|A|C|1399
*
9BKD|1|A|G|1447
9BKD|1|A|A|1448
9BKD|1|A|G|1449
9BKD|1|A|G|1450
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S17
- Chain Y
- 40S ribosomal protein S16
- Chain c
- Receptor of activated protein C kinase 1
- Chain h
- 40S ribosomal protein S20
Coloring options: