IL_9BKD_076

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9BKD|1|A|C|1403, 9BKD|1|A|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_076 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1185

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

9BKD|1|A|A|1402
9BKD|1|A|C|1403
9BKD|1|A|U|1404
9BKD|1|A|A|1405
*
9BKD|1|A|U|1441
9BKD|1|A|U|1442
9BKD|1|A|C|1443
9BKD|1|A|U|1444

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain Z

Small ribosomal subunit protein uS3

Chain h

40S ribosomal protein S20