IL_9BKD_084

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(OMC)CC*G(UR3)A(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_084 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.0659

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9BKD|1|A|G|1702
9BKD|1|A|OMC|1703
9BKD|1|A|C|1704
9BKD|1|A|C|1705
*
9BKD|1|A|G|1829
9BKD|1|A|UR3|1830
9BKD|1|A|A|1831
9BKD|1|A|6MZ|1832
9BKD|1|A|C|1833

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain U

Programmed cell death protein 4