IL_9BKD_091

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_091 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1059

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

9BKD|1|A|U|1733
9BKD|1|A|G|1734
9BKD|1|A|A|1735
9BKD|1|A|G|1736
*
9BKD|1|A|C|1798
9BKD|1|A|G|1799
9BKD|1|A|A|1800
9BKD|1|A|A|1801

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS8

Chain S

Small ribosomal subunit protein eS6