IL_9BKD_092

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_092 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.0743

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9BKD|1|A|C|1739
9BKD|1|A|C|1740
9BKD|1|A|U|1741
*
9BKD|1|A|A|1793
9BKD|1|A|C|1794
9BKD|1|A|G|1795

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS8

Chain S

Small ribosomal subunit protein eS6