IL_9BKD_093
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_093 not in the Motif Atlas
- Homologous match to IL_8C3A_480
- Geometric discrepancy: 0.1587
- The information below is about IL_8C3A_480
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9BKD|1|A|C|1742
9BKD|1|A|G|1743
9BKD|1|A|G|1744
9BKD|1|A|A|1745
9BKD|1|A|U|1746
*
9BKD|1|A|A|1788
9BKD|1|A|G|1789
9BKD|1|A|A|1790
9BKD|1|A|A|1791
9BKD|1|A|G|1792
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain R
- Small ribosomal subunit protein eS8
- Chain S
- Small ribosomal subunit protein eS6
Coloring options: