IL_9BKD_096

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_096 not in the Motif Atlas

Homologous match to IL_8C3A_401

Geometric discrepancy: 0.139

The information below is about IL_8C3A_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BKD|1|A|OMU|116
9BKD|1|A|C|117
9BKD|1|A|C|118
9BKD|1|A|PSU|119
9BKD|1|A|U|120
9BKD|1|A|OMU|121
*
9BKD|1|A|A|343
9BKD|1|A|U|344
9BKD|1|A|U|345
9BKD|1|A|C|346
9BKD|1|A|G|347

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain R

Small ribosomal subunit protein eS8