IL_9BKD_097
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAUAAC*GCUAAUA(OMC)
- Length
- 15 nucleotides
- Bulged bases
- 9BKD|1|A|U|172
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_097 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.0821
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BKD|1|A|G|145
9BKD|1|A|G|146
9BKD|1|A|A|147
9BKD|1|A|U|148
9BKD|1|A|A|149
9BKD|1|A|A|150
9BKD|1|A|C|151
*
9BKD|1|A|G|167
9BKD|1|A|C|168
9BKD|1|A|U|169
9BKD|1|A|A|170
9BKD|1|A|A|171
9BKD|1|A|U|172
9BKD|1|A|A|173
9BKD|1|A|OMC|174
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain S
- Small ribosomal subunit protein eS6
- Chain T
- Small ribosomal subunit protein eS24
Coloring options: