IL_9BKD_103

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*(5MC)G

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_103 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.1622

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9BKD|1|A|C|1363
9BKD|1|A|U|1364
9BKD|1|A|G|1365
*
9BKD|1|A|5MC|1374
9BKD|1|A|G|1375

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17

Chain Q

40S ribosomal protein S26