IL_9BLN_004

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

9BLN|1|A|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_004 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3114

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9BLN|1|A|C|37
9BLN|1|A|A|38
9BLN|1|A|A|39
9BLN|1|A|A|40
*
9BLN|1|A|U|514
9BLN|1|A|G|515
9BLN|1|A|A|516
9BLN|1|A|OMC|517
9BLN|1|A|G|518

Current chains

Chain A

rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain D

Small ribosomal subunit protein uS4

Chain T

Small ribosomal subunit protein eS24