IL_9BLN_012

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9BLN|1|A|G|113, 9BLN|1|A|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_012 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1376

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9BLN|1|A|U|112
9BLN|1|A|G|113
9BLN|1|A|G|114
9BLN|1|A|U|115
*
9BLN|1|A|A|348
9BLN|1|A|A|349

Current chains

Chain A

rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain R

Small ribosomal subunit protein eS8