IL_9BLN_052

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9BLN|1|A|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_052 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.174

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

9BLN|1|A|G|952
9BLN|1|A|C|953
9BLN|1|A|U|954
9BLN|1|A|A|955
9BLN|1|A|G|956
*
9BLN|1|A|C|967
9BLN|1|A|U|968
9BLN|1|A|U|969
9BLN|1|A|G|970
9BLN|1|A|G|971
9BLN|1|A|A|972
9BLN|1|A|C|973
9BLN|1|A|C|974

Current chains

Chain A

rRNA

Nearby chains

Chain O

Small ribosomal subunit protein eS1

Chain P

40S ribosomal protein S14