IL_9BLN_056
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_056 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1183
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
9BLN|1|A|C|1098
9BLN|1|A|G|1099
9BLN|1|A|A|1100
9BLN|1|A|U|1101
*
9BLN|1|A|G|1131
9BLN|1|A|C|1132
9BLN|1|A|A|1133
9BLN|1|A|G|1134
Current chains
- Chain A
- rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS15
- Chain M
- Small ribosomal subunit protein eS17
- Chain N
- Small ribosomal subunit protein uS2
- Chain O
- Small ribosomal subunit protein eS1
- Chain Q
- Small ribosomal subunit protein eS26
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