IL_9BLN_073
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 9BLN|1|A|A|1489
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_073 not in the Motif Atlas
- Geometric match to IL_4P3T_005
- Geometric discrepancy: 0.1256
- The information below is about IL_4P3T_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
9BLN|1|A|C|1336
9BLN|1|A|4AC|1337
9BLN|1|A|G|1338
*
9BLN|1|A|C|1488
9BLN|1|A|A|1489
9BLN|1|A|OMG|1490
9BLN|1|A|G|1491
Current chains
- Chain A
- rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS5
- Chain Y
- Small ribosomal subunit protein uS9
- Chain Z
- Small ribosomal subunit protein uS3
- Chain h
- Small ribosomal subunit protein uS10
- Chain i
- Small ribosomal subunit protein uS14
- Chain p
- Programmed cell death protein 4
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