IL_9BLN_074

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_074 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1041

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

9BLN|1|A|U|1347
9BLN|1|A|G|1348
9BLN|1|A|G|1349
*
9BLN|1|A|C|1380
9BLN|1|A|G|1381
9BLN|1|A|A|1382

Current chains

Chain A

rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS5

Chain M

Small ribosomal subunit protein eS17

Chain N

Small ribosomal subunit protein uS2