IL_9BLN_077

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9BLN|1|A|C|1403, 9BLN|1|A|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_077 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1422

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

9BLN|1|A|A|1402
9BLN|1|A|C|1403
9BLN|1|A|U|1404
9BLN|1|A|A|1405
*
9BLN|1|A|U|1441
9BLN|1|A|U|1442
9BLN|1|A|C|1443
9BLN|1|A|U|1444

Current chains

Chain A

rRNA

Nearby chains

Chain Y

Small ribosomal subunit protein uS9

Chain Z

Small ribosomal subunit protein uS3

Chain h

Small ribosomal subunit protein uS10