IL_9BLN_097

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_097 not in the Motif Atlas

Homologous match to IL_8C3A_401

Geometric discrepancy: 0.171

The information below is about IL_8C3A_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BLN|1|A|OMU|116
9BLN|1|A|C|117
9BLN|1|A|C|118
9BLN|1|A|PSU|119
9BLN|1|A|U|120
9BLN|1|A|OMU|121
*
9BLN|1|A|A|343
9BLN|1|A|U|344
9BLN|1|A|U|345
9BLN|1|A|C|346
9BLN|1|A|G|347

Current chains

Chain A

rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain R

Small ribosomal subunit protein eS8