IL_9BLN_098
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUAAC*GCUAAUA(OMC)
- Length
- 15 nucleotides
- Bulged bases
- 9BLN|1|A|U|172
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_098 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.0867
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BLN|1|A|G|145
9BLN|1|A|G|146
9BLN|1|A|A|147
9BLN|1|A|U|148
9BLN|1|A|A|149
9BLN|1|A|A|150
9BLN|1|A|C|151
*
9BLN|1|A|G|167
9BLN|1|A|C|168
9BLN|1|A|U|169
9BLN|1|A|A|170
9BLN|1|A|A|171
9BLN|1|A|U|172
9BLN|1|A|A|173
9BLN|1|A|OMC|174
Current chains
- Chain A
- rRNA
Nearby chains
- Chain S
- Small ribosomal subunit protein eS6
- Chain T
- Small ribosomal subunit protein eS24
Coloring options: