IL_9BLN_104

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*(5MC)G

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_104 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.1714

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9BLN|1|A|C|1363
9BLN|1|A|U|1364
9BLN|1|A|G|1365
*
9BLN|1|A|5MC|1374
9BLN|1|A|G|1375

Current chains

Chain A

rRNA

Nearby chains

Chain M

Small ribosomal subunit protein eS17

Chain Q

Small ribosomal subunit protein eS26