IL_9BS0_004
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACGGGACGAACACCGAUAUGC*GAUUU
- Length
- 26 nucleotides
- Bulged bases
- 9BS0|1|A|G|63, 9BS0|1|A|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BS0_004 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.3095
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
9BS0|1|A|A|56
9BS0|1|A|C|57
9BS0|1|A|G|58
9BS0|1|A|G|59
9BS0|1|A|G|60
9BS0|1|A|A|61
9BS0|1|A|C|62
9BS0|1|A|G|63
9BS0|1|A|A|64
9BS0|1|A|A|65
9BS0|1|A|C|66
9BS0|1|A|A|67
9BS0|1|A|C|68
9BS0|1|A|C|69
9BS0|1|A|G|70
9BS0|1|A|A|71
9BS0|1|A|U|72
9BS0|1|A|A|73
9BS0|1|A|U|74
9BS0|1|A|G|75
9BS0|1|A|C|76
*
9BS0|1|A|G|109
9BS0|1|A|A|110
9BS0|1|A|U|111
9BS0|1|A|U|112
9BS0|1|A|U|113
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain O
- Large ribosomal subunit protein uL23
- Chain R
- Large ribosomal subunit protein uL29
- Chain U
- Large ribosomal subunit protein bL34
Coloring options: