IL_9BS0_005

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

9BS0|1|A|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_005 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.2184

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9BS0|1|A|G|81
9BS0|1|A|G|82
9BS0|1|A|G|83
9BS0|1|A|A|84
9BS0|1|A|G|85
*
9BS0|1|A|C|97
9BS0|1|A|U|98
9BS0|1|A|U|99
9BS0|1|A|U|100
9BS0|1|A|G|101
9BS0|1|A|A|102
9BS0|1|A|U|103
9BS0|1|A|C|104

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein uL24

Chain R

Large ribosomal subunit protein uL29