IL_9BS0_008

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_008 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1282

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9BS0|1|A|G|191
9BS0|1|A|G|192
9BS0|1|A|A|193
9BS0|1|A|A|194
9BS0|1|A|C|195
9BS0|1|A|U|196
9BS0|1|A|G|197
*
9BS0|1|A|C|204
9BS0|1|A|U|205
9BS0|1|A|A|206
9BS0|1|A|A|207
9BS0|1|A|G|208
9BS0|1|A|U|209
9BS0|1|A|A|210
9BS0|1|A|C|211

Current chains

Chain A

23S rRNA

Nearby chains