IL_9BS0_015

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAC*GAGUGAAAGAGAUC

Length

18 nucleotides

Bulged bases

9BS0|1|A|G|550, 9BS0|1|A|U|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_015 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.285

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

9BS0|1|A|G|528
9BS0|1|A|C|529
9BS0|1|A|A|530
9BS0|1|A|C|531
*
9BS0|1|A|G|542
9BS0|1|A|A|543
9BS0|1|A|G|544
9BS0|1|A|U|545
9BS0|1|A|G|546
9BS0|1|A|A|547
9BS0|1|A|A|548
9BS0|1|A|A|549
9BS0|1|A|G|550
9BS0|1|A|A|551
9BS0|1|A|G|552
9BS0|1|A|A|553
9BS0|1|A|U|554
9BS0|1|A|C|555

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL22

Chain P

Large ribosomal subunit protein uL24