IL_9BS0_026

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9BS0|1|A|G|823, 9BS0|1|A|A|835, 9BS0|1|A|A|836, 9BS0|1|A|U|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_026 not in the Motif Atlas

Geometric match to IL_8VTW_022

Geometric discrepancy: 0.0886

The information below is about IL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9BS0|1|A|G|822
9BS0|1|A|G|823
9BS0|1|A|G|824
*
9BS0|1|A|C|834
9BS0|1|A|A|835
9BS0|1|A|A|836
9BS0|1|A|U|837
9BS0|1|A|C|838

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain N

Large ribosomal subunit protein uL22

Chain U

Large ribosomal subunit protein bL34