IL_9BS0_028

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_028 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.2932

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9BS0|1|A|G|891
9BS0|1|A|U|892
9BS0|1|A|A|893
9BS0|1|A|A|894
9BS0|1|A|G|895
*
9BS0|1|A|U|977
9BS0|1|A|A|978
9BS0|1|A|U|979
9BS0|1|A|C|980

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

Large ribosomal subunit protein uL30