IL_9BS0_039

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9BS0|1|A|U|1079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_039 not in the Motif Atlas

Homologous match to IL_9DFE_040

Geometric discrepancy: 0.4867

The information below is about IL_9DFE_040

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9BS0|1|A|G|1077
9BS0|1|A|A|1078
9BS0|1|A|U|1079
9BS0|1|A|G|1080
*
9BS0|1|A|C|1167
9BS0|1|A|G|1168
9BS0|1|A|C|1169

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

Large ribosomal subunit protein uL6