IL_9BS0_051

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAUG*CUAG

Length

9 nucleotides

Bulged bases

9BS0|1|A|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_051 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.3299

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9BS0|1|A|C|1463
9BS0|1|A|A|1464
9BS0|1|A|A|1465
9BS0|1|A|U|1466
9BS0|1|A|G|1467
*
9BS0|1|A|C|1625
9BS0|1|A|U|1626
9BS0|1|A|A|1627
9BS0|1|A|G|1628

Current chains

Chain A

23S rRNA

Nearby chains