IL_9BS0_053

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

9BS0|1|A|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_053 not in the Motif Atlas

Homologous match to IL_9DFE_056

Geometric discrepancy: 0.2896

The information below is about IL_9DFE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9BS0|1|A|A|1483
9BS0|1|A|U|1484
9BS0|1|A|A|1485
9BS0|1|A|G|1486
*
9BS0|1|A|U|1599
9BS0|1|A|G|1600
9BS0|1|A|A|1601
9BS0|1|A|U|1602
9BS0|1|A|U|1603

Current chains

Chain A

23S rRNA

Nearby chains