IL_9BS0_068

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

9BS0|1|A|G|1830, 9BS0|1|A|A|1845, 9BS0|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1439

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9BS0|1|A|U|1827
9BS0|1|A|G|1828
9BS0|1|A|C|1829
9BS0|1|A|G|1830
9BS0|1|A|A|1831
9BS0|1|A|A|1832
9BS0|1|A|G|1833
*
9BS0|1|A|C|1842
9BS0|1|A|G|1843
9BS0|1|A|A|1844
9BS0|1|A|A|1845
9BS0|1|A|G|1846
9BS0|1|A|U|1847
9BS0|1|A|A|1848
9BS0|1|A|U|1849
9BS0|1|A|A|1850

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2