IL_9BS0_077

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

9BS0|1|A|A|2141, 9BS0|1|A|C|2142, 9BS0|1|A|G|2145, 9BS0|1|A|A|2146, 9BS0|1|A|U|2147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_077 not in the Motif Atlas

Geometric match to IL_7Q82_001

Geometric discrepancy: 0.1424

The information below is about IL_7Q82_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9BS0|1|A|G|2139
9BS0|1|A|U|2140
9BS0|1|A|A|2141
9BS0|1|A|C|2142
9BS0|1|A|A|2143
9BS0|1|A|G|2144
9BS0|1|A|G|2145
9BS0|1|A|A|2146
9BS0|1|A|U|2147
9BS0|1|A|A|2148
9BS0|1|A|G|2149
*
9BS0|1|A|C|2207
9BS0|1|A|C|2208

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

GTPase Der

Chain Y

Large ribosomal subunit protein uL1