IL_9BS0_085
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9BS0|1|A|G|2809
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BS0_085 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.1416
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9BS0|1|A|U|2665
9BS0|1|A|U|2666
9BS0|1|A|G|2667
9BS0|1|A|A|2668
9BS0|1|A|G|2669
*
9BS0|1|A|C|2803
9BS0|1|A|A|2804
9BS0|1|A|A|2805
9BS0|1|A|G|2806
9BS0|1|A|A|2807
9BS0|1|A|U|2808
9BS0|1|A|G|2809
9BS0|1|A|A|2810
9BS0|1|A|G|2811
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain G
- Large ribosomal subunit protein uL13
Coloring options: