IL_9BS0_086

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_086 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.2791

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9BS0|1|A|U|2681
9BS0|1|A|U|2682
9BS0|1|A|A|2683
9BS0|1|A|G|2684
9BS0|1|A|U|2685
9BS0|1|A|A|2686
9BS0|1|A|C|2687
*
9BS0|1|A|G|2692
9BS0|1|A|G|2693
9BS0|1|A|A|2694
9BS0|1|A|C|2695
9BS0|1|A|C|2696
9BS0|1|A|G|2697

Current chains

Chain A

23S rRNA

Nearby chains