IL_9BS0_088

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

9BS0|1|A|U|2718, 9BS0|1|A|A|2719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_088 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1248

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9BS0|1|A|U|2716
9BS0|1|A|G|2717
9BS0|1|A|U|2718
9BS0|1|A|A|2719
9BS0|1|A|C|2720
*
9BS0|1|A|G|2747
9BS0|1|A|G|2748
9BS0|1|A|U|2749
9BS0|1|A|A|2750
9BS0|1|A|G|2751

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein bL17

Chain K

Large ribosomal subunit protein bL19