IL_9BS0_089

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AUCG

Length

6 nucleotides

Bulged bases

9BS0|1|A|U|2741, 9BS0|1|A|C|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_089 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.1988

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9BS0|1|A|U|2724
9BS0|1|A|U|2725
*
9BS0|1|A|A|2740
9BS0|1|A|U|2741
9BS0|1|A|C|2742
9BS0|1|A|G|2743

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein bL17

Chain K

Large ribosomal subunit protein bL19