IL_9BS0_090

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

9BS0|1|A|A|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_090 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1858

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9BS0|1|A|G|2766
9BS0|1|A|A|2767
9BS0|1|A|U|2768
9BS0|1|A|A|2769
9BS0|1|A|A|2770
9BS0|1|A|G|2771
*
9BS0|1|A|U|2791
9BS0|1|A|G|2792
9BS0|1|A|A|2793
9BS0|1|A|A|2794
9BS0|1|A|G|2795
9BS0|1|A|C|2796

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL13