IL_9BS0_092

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*UGAC

Length

7 nucleotides

Bulged bases

9BS0|1|A|G|2897, 9BS0|1|A|A|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_092 not in the Motif Atlas

Homologous match to IL_4WF9_107

Geometric discrepancy: 0.2046

The information below is about IL_4WF9_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9BS0|1|A|G|2868
9BS0|1|A|A|2869
9BS0|1|A|G|2870
*
9BS0|1|A|U|2896
9BS0|1|A|G|2897
9BS0|1|A|A|2898
9BS0|1|A|C|2899

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein bL17

Chain K

Large ribosomal subunit protein bL19