IL_9BSS_014

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAC*GAGUGAAAGAGAUC

Length

18 nucleotides

Bulged bases

9BSS|1|A|G|550, 9BSS|1|A|U|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.3229

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.3

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

9BSS|1|A|G|528
9BSS|1|A|C|529
9BSS|1|A|A|530
9BSS|1|A|C|531
*
9BSS|1|A|G|542
9BSS|1|A|A|543
9BSS|1|A|G|544
9BSS|1|A|U|545
9BSS|1|A|G|546
9BSS|1|A|A|547
9BSS|1|A|A|548
9BSS|1|A|A|549
9BSS|1|A|G|550
9BSS|1|A|A|551
9BSS|1|A|G|552
9BSS|1|A|A|553
9BSS|1|A|U|554
9BSS|1|A|C|555

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL22

Chain P

Large ribosomal subunit protein uL24