IL_9BSS_015

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_015 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.1415

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9BSS|1|A|A|582
9BSS|1|A|G|583
9BSS|1|A|A|584
9BSS|1|A|G|585
*
9BSS|1|A|U|598
9BSS|1|A|G|599
9BSS|1|A|A|600
9BSS|1|A|U|601

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL13

Chain L

Large ribosomal subunit protein bL20