IL_9BSS_051

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

9BSS|1|A|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_051 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.3004

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9BSS|1|A|A|1483
9BSS|1|A|U|1484
9BSS|1|A|A|1485
9BSS|1|A|G|1486
*
9BSS|1|A|U|1599
9BSS|1|A|G|1600
9BSS|1|A|A|1601
9BSS|1|A|U|1602
9BSS|1|A|U|1603

Current chains

Chain A

23S rRNA

Nearby chains