IL_9BSS_062

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9BSS|1|A|G|1744

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_062 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1152

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.3

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9BSS|1|A|C|1731
9BSS|1|A|G|1732
9BSS|1|A|U|1733
9BSS|1|A|A|1734
9BSS|1|A|A|1735
9BSS|1|A|C|1736
*
9BSS|1|A|G|1741
9BSS|1|A|G|1742
9BSS|1|A|A|1743
9BSS|1|A|G|1744
9BSS|1|A|A|1745
9BSS|1|A|A|1746
9BSS|1|A|G|1747

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain V

Ribosome biogenesis GTPase A