IL_9BSS_075

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_075 not in the Motif Atlas

Homologous match to IL_9DFE_089

Geometric discrepancy: 0.2032

The information below is about IL_9DFE_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9BSS|1|A|C|2379
9BSS|1|A|G|2380
9BSS|1|A|A|2381
9BSS|1|A|G|2382
*
9BSS|1|A|C|2393
9BSS|1|A|G|2394
9BSS|1|A|A|2395
9BSS|1|A|G|2396

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL27