IL_9BSS_086

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AUCG

Length

6 nucleotides

Bulged bases

9BSS|1|A|U|2741, 9BSS|1|A|C|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_086 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.161

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

9BSS|1|A|U|2724
9BSS|1|A|U|2725
*
9BSS|1|A|A|2740
9BSS|1|A|U|2741
9BSS|1|A|C|2742
9BSS|1|A|G|2743

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein bL17

Chain K

Large ribosomal subunit protein bL19