IL_9BUP_001
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUU*AC
- Length
- 5 nucleotides
- Bulged bases
- 9BUP|1|AA|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_001 not in the Motif Atlas
- Homologous match to IL_8P9A_232
- Geometric discrepancy: 0.3074
- The information below is about IL_8P9A_232
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
9BUP|1|AA|G|13
9BUP|1|AA|U|14
9BUP|1|AA|U|15
*
9BUP|1|AC|A|151
9BUP|1|AC|C|152
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L7a
- Chain AP
- Ribosomal protein L15
- Chain AY
- 60S ribosomal protein L23
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