IL_9BUP_004

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUAA*UC

Length

8 nucleotides

Bulged bases

9BUP|1|AA|G|119, 9BUP|1|AA|U|120, 9BUP|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|G|118
9BUP|1|AA|G|119
9BUP|1|AA|U|120
9BUP|1|AA|U|121
9BUP|1|AA|A|122
9BUP|1|AA|A|123
*
9BUP|1|AA|U|158
9BUP|1|AA|C|159

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein L35

Chain AJ

60S ribosomal protein L7a

Chain AP

Ribosomal protein L15

Chain Ab

60S ribosomal protein L36