IL_9BUP_007
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUU*ACG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_007 not in the Motif Atlas
- Homologous match to IL_8P9A_237
- Geometric discrepancy: 0.2397
- The information below is about IL_8P9A_237
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
9BUP|1|AA|C|126
9BUP|1|AA|U|127
9BUP|1|AA|U|128
*
9BUP|1|AA|A|149
9BUP|1|AA|C|150
9BUP|1|AA|G|151
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein L35
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AJ
- 60S ribosomal protein L7a
- Chain AP
- Ribosomal protein L15
- Chain AY
- 60S ribosomal protein L23
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